Topic > Visualizing ATP analog turnover in living cells

Adenosine 5'-triphosphate (ATP) is the primary energy currency of cells and is involved in multiple cellular processes. Monitoring the hydrolytic activity of ATP in cells would be useful for understanding the cellular processes that consume ATP and would help to clarify the mode of action and regulation of the enzymes involved. Numerous fluorescence sensors have been reported to date for this purpose, but no methods are available to date for real-time monitoring of ATP hydrolysis within living cells. In this regard, a new fluorogenic probe for ATP was designed and synthesized. After enzymatic hydrolysis, this molecule shows an increase in fluorescence intensity and fluorescence lifetime which provides a readout of its hydrolysis and therefore can be used to monitor the process involving ATP utilization. We used confocal fluorescence microscopy and fluorescence lifetime imaging (FLIM) to monitor the hydrolysis of the ATP analog, Atto 488-adenosine tetraphosphate-Quencher (Ap4), in living cells. Our results demonstrate that Ap4 is hydrolyzed in lysosomes and autophagosomes. Our studies show that fluorescence microscopy can be directed toward live-cell imaging of autophagosome-lysosome distribution and autophagic flux using Ap4 without the need to overexpress fluorescently labeled proteins in cells. Say no to plagiarism. Get a tailor-made essay on "Why Violent Video Games Shouldn't Be Banned"? Get Original Essay Most of the chemical reactions that take place in the biological system are energetically unfavorable and therefore require enzymatic catalysts and are coupled to the hydrolysis of ATP which acts as an energy supply. In addition to providing energy, ATP is necessary for various other cellular processes. ATP acts as a cofactor for phosphate transfer by kinases during the process of protein phosphorylation and provides the energy for the conformational change of motor proteins. ATP is also the starting molecule for the formation of important messengers such as cAMP (cyclic adenosine monophosphate), cyclic di-AMP, diadenosine triphosphate (Ap3A) and diadenosine tetraphosphate (Ap4A). ATP plays a key role in a cell's energy, metabolic pathways, enzyme regulation, and transduction machinery. The quantity of ATP is directly proportional to certain physiological states of the cell and is also an indication of some metabolic disorders. Therefore, imaging ATP in these pathways will provide crucial information for comprehensive understanding of ATP-related processes and some physiological disorders. Many different methods have been established to measure extraordinary ATP turnover. They are based on the radioactive labeling of ATP, on the spectroscopic detection of the phosphate released through the formation of molybdenum blue or the formation of complexes with malachite green. However, these processes require purification of the reaction products prior to analysis and therefore no continuous, real-time measurement of ATP hydrolysis is possible. Furthermore, their applications are limited in cells because they are not accepted by most cellular enzymes or because they are not accepted by most cellular enzymes. require overexpression of another fluorescently labeled protein. For this reason, new methods have been developed which are based on the spectroscopic measurement of the reaction products by enzymatic turnover of ATP. Recently, some new fluorogenic probes for ATP have been designed and synthesized. These nucleotide analoguesFluorogenic reagents have been used to directly monitor enzyme activity without the use of other reagents. Nucleotide analogs are designed as FRET probes and are labeled with two chemical groups, a fluorescent dye that acts as a FRET donor and another molecule that acts as a FRET acceptor.[12] Therefore, in an intact molecule, intramolecular FRET occurs and after nucleotide cleavage, the donor fluorophore is spatially separated from the acceptor fluorophore and the energy transfer is terminated. This leads to increased fluorescence intensity and increased fluorescence lifetime of the donor fluorophore which is quantified to measure its hydrolysis. This approach was successfully used to study the activity of the ubiquitin-activating UBA enzyme, C. adamenteus phosphodiesterase I (SVPD), and to elucidate ATP-dependent acetone metabolism in bacterial extracts of D. biacutus . Most previous studies have focused on studying ATP hydrolysis in various in vitro systems. We monitored cellular ATP consumption pathways in living cells with high spatial and temporal resolution using various fluorescence microscopy techniques. We used confocal microscopy and FLIM-FRET to monitor the hydrolysis of Ap4. Fluorescence lifetime imaging (FLIM) is an approach to measuring FRET that detects the time-resolved donor fluorescence signal, and the donor lifetime provides a direct measure of energy transfer. Fluorescence lifetime is a characteristic property of a fluorophore and is independent of excitation intensity, concentration changes and photobleaching to a certain extent. We demonstrated that Ap4 is used in lysosomes as seen by colocalization studies of Ap4 fluorescence with lysosomal marker. A significant decrease in Ap4 hydrolysis was observed when cells were treated with the macrolide antibiotic bafilomycin A1, a potent inhibitor of lysosomal H+ ATPase, or chloroquine, a weak lysomotropic base that deactivates lysosomal enzymes. The hydrolysis activity of Ap4 shows a strong quantitative correlation with the process of cellular autophagy. Our studies indicate the utilization of Ap4 during the autophagy process, as demonstrated by the colocalization of the autophagy marker LC3B-RFP and the Ap4 hydrolysis puncta. We propose that Ap4 can be used as a chemosensor to monitor autophagic flux in living cells. After synthesizing the Ap4 compound, we visualized its hydrolysis in real time by fluorescence lifetime measurements after incorporation into living cells. This approach is based on the observation of Forster resonance energy transfer (FRET) between two fluorophores. After hydrolysis, FRET can be quantified by measuring the decrease in donor fluorescence lifetime, and this is one of the most efficient and fastest methods to measure FRET. The lifetime was measured simultaneously on a wide-field microscope for each pixel. A significant increase in fluorescence lifetime (phase) was observed over time as a result of enzymatic hydrolysis of Ap4. To the best of our knowledge, this is the first time that ATP analog hydrolysis has been monitored in living cells. Hydrolysis of Ap4 begins as soon as it is introduced into cells and reaches steady state in approximately 60 minutes. However, the actual cellular components and cellular process using Ap4 were still elusive. Then confocal microscopy was later also used to spatially resolve the cellular components using this compound more precisely. Localization of Ap4 hydrolysis in lysosomes:4.